Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1730

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10097 and 10098 are separated by 331 nucleotides10098 and 10099 are separated by 852 nucleotides mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58,480 to 59,986 10097 mRNA_1730: 10098 - KOG4708 Mitochondrial ribosomal protein MRP17, at 60,318 to 61,237 10098 mRNA_1731: 10099 - Hypothetical Protein, at 62,090 to 63,277 10099

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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59,324 - 10097 mRNA_1729 0.56 +1.1
59,324 - 10097 mRNA_1729 0.56 -0.4
59,369 + 10097 mRNA_1729 0.59 -0.2
59,375 + 10097 mRNA_1729 0.59 -0.5
59,389 - 10097 mRNA_1729 0.60 -0.7
59,391 + 10097 mRNA_1729 0.60 +0.7
59,407 - 10097 mRNA_1729 0.62 +0.7
59,535 - 10097 mRNA_1729 0.70 +0.6
59,536 + 10097 mRNA_1729 0.70 +1.8
59,566 + 10097 mRNA_1729 0.72 -0.3
59,570 + 10097 mRNA_1729 0.72 -1.7
59,720 - 10097 mRNA_1729 0.82 -0.6
59,740 + 10097 mRNA_1729 0.84 -0.2
59,740 + 10097 mRNA_1729 0.84 -0.1
59,741 + 10097 mRNA_1729 0.84 -0.8
59,749 - 10097 mRNA_1729 0.84 -1.5
59,755 + 10097 mRNA_1729 0.85 -0.1
59,791 + 10097 mRNA_1729 0.87 -1.1
59,877 + -1.0
59,896 - -0.7
59,908 - -0.8
60,020 - +0.5
60,036 - -1.2
60,036 - +0.5
60,040 + +3.6
60,047 - -1.0
60,048 + +0.7
60,061 - +0.6
60,062 + -0.9
60,065 - -1.0
60,068 + +0.9
60,069 + +0.5
60,070 + -0.2
60,083 + +0.6
60,086 - +0.3
60,089 + -0.6
60,089 - +0.2
60,090 + -0.9
60,143 + +0.4
60,163 - -0.4
60,173 + +0.8
60,271 - +0.6
61,262 + -0.4
61,589 + +0.8
61,717 - -0.7
61,737 + +1.5
62,163 - +0.2

Or see this region's nucleotide sequence