Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1736

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10104 and 10105 are separated by 275 nucleotides mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78,147 to 80,608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80,884 to 82,688 10105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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77,176 - +0.6
77,221 - +1.5
77,224 - -0.1
77,234 + +2.1
77,241 + +1.3
77,242 + +1.5
77,251 + -0.9
77,251 + +2.2
77,256 + +2.0
77,260 - -1.4
77,261 + -0.4
77,262 + -0.8
77,262 - +1.1
77,291 + +3.0
77,294 - -0.7
77,295 - -0.1
77,324 + +0.4
77,334 - +0.8
77,339 - +0.7
77,345 - +0.4
77,350 - +2.4
77,350 + +0.9
77,351 + +0.7
77,353 + -0.1
77,360 + +0.6
77,373 - +0.2
77,374 - -1.8
77,386 + +0.5
77,394 - -0.3
77,396 + +1.9
77,399 - +1.0
77,400 + +0.4
77,400 + +0.5
77,407 + +0.3
77,412 - -0.3
77,421 + +0.2
77,422 + -0.1
77,425 + +1.9
77,427 + -0.1
77,427 + -0.7
77,434 + +0.4
77,717 + +1.1
77,722 + +2.4
77,976 - +0.8
78,120 - +1.2
78,287 - +1.3
78,617 + 10104 mRNA_1736 0.19 -0.1
78,775 - 10104 mRNA_1736 0.26 -0.5
78,889 - 10104 mRNA_1736 0.30 +1.8
78,898 - 10104 mRNA_1736 0.31 -0.0
78,927 - 10104 mRNA_1736 0.32 -0.0
79,189 + 10104 mRNA_1736 0.42 +0.3
79,335 + 10104 mRNA_1736 0.48 +0.8
79,343 - 10104 mRNA_1736 0.49 +0.7
79,374 - 10104 mRNA_1736 0.50 -2.4
79,382 + 10104 mRNA_1736 0.50 +0.5
79,606 - 10104 mRNA_1736 0.59 +0.8
80,622 - +0.3
80,625 - -0.5
80,669 - -0.5
80,789 + +0.2
80,790 - -0.2
80,795 - +0.7
80,803 - +1.3
80,842 + -0.2
80,970 + +1.4
81,115 + 10105 mRNA_1737 0.13 -2.2
81,237 - 10105 mRNA_1737 0.20 +0.2
81,252 + 10105 mRNA_1737 0.20 -0.8
81,257 + 10105 mRNA_1737 0.21 -0.5
81,292 + 10105 mRNA_1737 0.23 +0.2

Or see this region's nucleotide sequence