Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1751

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10118 and 10119 are separated by 144 nucleotides10119 and 10120 are separated by 163 nucleotides mRNA_1750: 10118 - K16185 RRAGA_B Ras-related GTP-binding protein A/B, at 113,201 to 114,530 10118 mRNA_1751: 10119 - KOG2726 Mitochondrial polypeptide chain release factor, at 114,675 to 115,608 10119 mRNA_1752: 10120 - K15363 FAN1, MTMR15 fanconi-associated nuclease 1, at 115,772 to 119,229 10120

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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114,618 - +0.5
114,620 + +0.7
114,931 - 10119 mRNA_1751 0.27 +0.1
114,946 + 10119 mRNA_1751 0.29 +1.2
115,808 + -0.7
116,310 + 10120 mRNA_1752 0.16 +0.7
116,334 - 10120 mRNA_1752 0.16 +0.1
116,390 + 10120 mRNA_1752 0.18 +0.4

Or see this region's nucleotide sequence