Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1760

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10127 and 10128 are separated by 429 nucleotides mRNA_1759: 10127 - K13345 PEX12, PAF3 peroxin-12, at 132,751 to 134,282 10127 mRNA_1760: 10128 - KOG0940 Ubiquitin protein ligase RSP5/NEDD4, at 134,712 to 138,303 10128

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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134,295 - +3.3
134,307 + -0.2
134,324 + +1.4
134,613 - -0.8
134,614 + +1.3
135,502 - 10128 mRNA_1760 0.22 +0.6
135,595 + 10128 mRNA_1760 0.25 +2.9
136,053 + 10128 mRNA_1760 0.37 +1.2
136,230 - 10128 mRNA_1760 0.42 -0.5
136,319 - 10128 mRNA_1760 0.45 +2.1
136,410 - 10128 mRNA_1760 0.47 +1.3
137,315 + 10128 mRNA_1760 0.72 +0.4
137,483 - 10128 mRNA_1760 0.77 +0.4
137,671 + 10128 mRNA_1760 0.82 +0.4
137,926 - 10128 mRNA_1760 0.89 -0.5
138,063 - -0.3
138,069 - +0.2
138,073 - +0.1
138,457 - +0.0
138,460 - +1.3
138,464 + -0.8
138,614 + +1.7
138,638 + +0.4
138,653 - +2.0
138,675 + +2.2
138,678 + +0.7
138,716 - +0.8
138,726 - +0.8
138,860 + +0.0
138,875 - +0.1
138,886 + +0.1
139,013 - +0.7
139,034 + -0.3
139,059 - -0.2
139,078 - +0.6
139,079 + +0.6
139,081 + +0.5
139,094 - +2.0
139,133 - +0.2
139,143 + +0.1
139,222 + -0.1
139,225 - +1.4
139,233 - +0.8
139,236 + +3.4
139,237 + +2.4
139,252 + +0.1
139,272 + -0.5
139,287 - -0.0
139,292 - +0.6

Or see this region's nucleotide sequence