Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1770

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10137 and 10138 are separated by 355 nucleotides10138 and 10139 are separated by 144 nucleotides mRNA_1769: 10137 - Interpro F-box-like 0, at 159,108 to 161,176 10137 mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161,532 to 163,380 10138 mRNA_1771: 10139 - K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155, at 163,525 to 168,544 10139

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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160,548 - 10137 mRNA_1769 0.70 +0.4
160,594 - 10137 mRNA_1769 0.72 +1.4
160,813 - 10137 mRNA_1769 0.82 +1.7
160,821 + 10137 mRNA_1769 0.83 +2.4
161,141 - +0.9
162,282 - 10138 mRNA_1770 0.41 -0.2
162,870 - 10138 mRNA_1770 0.72 -0.8
162,879 - 10138 mRNA_1770 0.73 -0.0
163,221 + -0.0
163,822 - +0.6

Or see this region's nucleotide sequence