Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1771

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10138 and 10139 are separated by 144 nucleotides10139 and 10140 are separated by 945 nucleotides mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161,532 to 163,380 10138 mRNA_1771: 10139 - K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155, at 163,525 to 168,544 10139 mRNA_1772: 10140 - K01480 speB agmatinase, at 169,490 to 170,600 10140

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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162,870 - 10138 mRNA_1770 0.72 -0.8
162,879 - 10138 mRNA_1770 0.73 -0.0
163,221 + -0.0
163,822 - +0.6
168,629 - +1.0
168,765 - +1.8
168,830 - +2.8
169,061 - +1.5
169,061 - -0.6
169,067 + +0.8
169,067 + +1.3
169,100 - -0.9
169,374 - +1.0
169,457 - +0.0

Or see this region's nucleotide sequence