Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1804

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10171 and 10172 are separated by 177 nucleotides10172 and 10173 are separated by 910 nucleotides mRNA_1803: 10171 - K15205 TFC6 transcription factor C subunit 6, at 238,307 to 241,610 10171 mRNA_1804: 10172 - Hypothetical Protein, at 241,788 to 243,277 10172 mRNA_1805: 10173 - K00616 E2.2.1.2, talA, talB transaldolase, at 244,188 to 245,888 10173

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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241,692 - +1.0
241,818 - +0.7
241,842 + +0.1
241,981 + 10172 mRNA_1804 0.13 +0.7
241,990 + 10172 mRNA_1804 0.14 +0.1
242,298 + 10172 mRNA_1804 0.34 -0.9
243,476 - -0.2
243,476 - +1.5
243,595 - +0.1
244,039 + +0.5

Or see this region's nucleotide sequence