Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1833

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10200 and 10201 are separated by 567 nucleotides10201 and 10202 are separated by 176 nucleotides mRNA_1832: 10200 - K11188 PRDX6 peroxiredoxin 6, 1-Cys peroxiredoxin, at 320,371 to 321,858 10200 mRNA_1833: 10201 - Hypothetical Protein, at 322,426 to 322,877 10201 mRNA_1834: 10202 - Hypothetical Protein, at 323,054 to 324,268 10202

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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321,889 + +0.1
321,904 + +0.1
321,916 - +0.8
321,925 - +0.3
321,942 - +1.5
321,998 + +0.2
322,017 - +0.7
322,028 - -0.3
322,028 - -0.1
322,033 + -0.1
322,046 + -0.2
322,047 + +0.1
322,153 - +0.7
322,181 + +0.0
322,184 + +0.2
322,191 + -0.3
322,194 + +0.0
322,194 + +1.0
322,224 + +0.8
322,235 - -0.5
322,329 - +1.7
322,334 + +0.4
322,481 - 10201 mRNA_1833 0.12 +0.2
322,884 + -0.7
322,904 + +1.5
323,235 + 10202 mRNA_1834 0.15 +0.5
323,273 + 10202 mRNA_1834 0.18 -0.3
323,354 - 10202 mRNA_1834 0.25 +1.1
323,369 - 10202 mRNA_1834 0.26 +2.2

Or see this region's nucleotide sequence