Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1876

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10243 and 10244 are separated by 130 nucleotides10244 and 10245 are separated by 406 nucleotides mRNA_1875: 10243 - Hypothetical Protein, at 415,484 to 416,261 10243 mRNA_1876: 10244 - Hypothetical Protein, at 416,392 to 418,180 10244 mRNA_1877: 10245 - K03363 CDC20 cell division cycle 20, cofactor of APC complex, at 418,587 to 420,557 10245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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415,721 + 10243 mRNA_1875 0.30 -1.3
416,426 + +1.0
417,449 + 10244 mRNA_1876 0.59 +0.5
417,888 + 10244 mRNA_1876 0.84 +2.4
418,023 - -0.6
418,145 - +0.3
418,151 - -1.5
418,184 + -0.2
418,204 + -0.7
418,210 + +0.1
418,330 + +0.9
418,345 - +1.3
418,351 - -1.4
418,357 + +2.4
418,365 + -0.4
418,365 - +0.6
418,365 + +0.5
418,367 - -1.8
418,368 + +0.6
418,370 + +1.5
418,371 + +0.1
418,372 + -0.5
418,382 + +0.9
418,383 + -0.1
418,397 - -1.1
418,400 - +0.5
418,401 + +2.0
418,403 + -1.0
418,408 - +0.9
418,412 + +0.2
418,418 - +0.3
418,426 + -0.5
418,427 - +0.2
418,482 + -0.1
418,485 - +0.0
418,492 - -0.4
418,492 + -0.3
418,494 - +1.4
418,495 + -0.8
418,496 + +0.3
418,503 + +0.1
418,504 + -1.0
418,510 + -0.9
418,527 - -1.1

Or see this region's nucleotide sequence