Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1878

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10245 and 10246 are separated by 294 nucleotides10246 and 10247 are separated by 364 nucleotides mRNA_1877: 10245 - K03363 CDC20 cell division cycle 20, cofactor of APC complex, at 418,587 to 420,557 10245 mRNA_1878: 10246 - K01875 SARS, serS seryl-tRNA synthetase, at 420,852 to 422,750 10246 mRNA_1879: 10247 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 423,115 to 424,156 10247

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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422,922 - -0.5
422,929 - -0.3
422,933 + -0.7
422,950 - +0.1
423,367 - 10247 mRNA_1879 0.24 +0.0
423,393 - 10247 mRNA_1879 0.27 +0.2
423,670 + 10247 mRNA_1879 0.53 -0.3
423,684 + 10247 mRNA_1879 0.55 +1.0

Or see this region's nucleotide sequence