Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1883

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10250 and 10251 are separated by 323 nucleotides10251 and 10252 are separated by 615 nucleotides mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428,761 to 429,844 10250 mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430,168 to 431,962 10251 mRNA_1884: 10252 - Hypothetical Protein, at 432,578 to 433,282 10252

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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430,062 + -0.1
430,062 - +0.4
430,063 - +1.3
430,068 - +0.1
430,069 + -0.5
430,072 + +0.6
430,138 - +0.8
430,206 - +0.5
430,213 - +2.2
430,218 + +1.0
430,635 - 10251 mRNA_1883 0.26 +0.5
430,649 + 10251 mRNA_1883 0.27 +0.7
430,830 - 10251 mRNA_1883 0.37 +1.4
430,848 - 10251 mRNA_1883 0.38 +0.8
430,935 - 10251 mRNA_1883 0.43 -1.5
430,982 + 10251 mRNA_1883 0.45 +1.1
431,077 + 10251 mRNA_1883 0.51 -0.3
431,514 - 10251 mRNA_1883 0.75 +1.1
431,546 + 10251 mRNA_1883 0.77 -0.1
431,699 - 10251 mRNA_1883 0.85 +1.7
431,738 + 10251 mRNA_1883 0.87 +0.8
431,792 - -0.6
431,806 - +0.8
431,826 - -2.3
431,829 - +1.7
431,845 - +1.3
431,866 + +3.0
431,866 + +0.4
431,982 + -0.1
431,982 + -0.6
431,990 - +0.4
431,997 - -1.5
431,998 + +0.2
432,006 - +2.5
432,011 + +0.3
432,023 + +0.5
432,036 + +0.1
432,054 + +2.2
432,066 - +0.0
432,067 + +1.3
432,085 - -0.2
432,116 + -0.4
432,123 - +1.3
432,124 + -0.2
432,134 - -0.9
432,134 - +0.3
432,134 - +1.5
432,137 - -0.0
432,143 + -0.9
432,147 - +1.2
432,147 - +0.8
432,157 + +0.7
432,160 + +0.1
432,162 - -0.2
432,165 + -0.1
432,165 - +0.0
432,165 + +0.3
432,185 - +0.5
432,188 - -0.6
432,190 + +0.2
432,197 + +0.9
432,203 - -0.3
432,230 + -0.5
432,234 - +0.1
432,317 + -0.2
432,335 + +0.7
432,370 - +2.6
432,378 - -0.0
432,379 - +1.0
432,387 - +0.4
432,390 + +1.5
432,391 - +0.2
432,391 - +1.6
432,398 - -0.1
432,407 + -0.2
432,425 - +0.8
432,436 + -0.2
432,442 + -0.8
432,444 - +0.6
432,450 - +2.0
432,451 - -0.5
432,451 + -0.8
432,458 + +0.7
432,461 + +1.3
432,483 - +0.6
432,483 + -0.7
432,489 - +0.3
432,499 + +0.5
432,500 - -0.6
432,501 + +0.6
432,507 + -0.1
432,594 + -0.2
432,744 - 10252 mRNA_1884 0.24 +0.2
432,781 - 10252 mRNA_1884 0.29 -0.0
432,934 + 10252 mRNA_1884 0.50 -0.0

Or see this region's nucleotide sequence