Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1908

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10276 and 10277 are separated by 581 nucleotides mRNA_1908: 10276 - K01426 E3.5.1.4, amiE amidase, at 490,535 to 492,598 10276 mRNA_1909: 10277 - K01426 E3.5.1.4, amiE amidase, at 493,180 to 495,383 10277

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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489,852 - +0.1
490,154 + +1.4
490,351 - -0.9
490,583 - -0.2
490,610 + +1.1
490,619 - +0.2
490,903 + 10276 mRNA_1908 0.18 +0.3
491,306 - 10276 mRNA_1908 0.37 -0.5
491,468 - 10276 mRNA_1908 0.45 -0.4
491,499 - 10276 mRNA_1908 0.47 -0.6
491,956 + 10276 mRNA_1908 0.69 +1.0
492,198 + 10276 mRNA_1908 0.81 +0.4
492,381 + 10276 mRNA_1908 0.89 -0.8
492,681 - +0.7
492,934 + +1.5
493,073 - -0.5
493,219 + -0.5
493,266 + -0.2
493,390 + +0.2
493,540 + 10277 mRNA_1909 0.16 -0.6

Or see this region's nucleotide sequence