Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1961

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10328 and 10329 are separated by 432 nucleotides10329 and 10330 are separated by 339 nucleotides mRNA_1960: 10328 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 613,593 to 615,935 10328 mRNA_1961: 10329 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140, at 616,368 to 617,254 10329 mRNA_1962: 10330 - K00133 asd aspartate-semialdehyde dehydrogenase, at 617,594 to 618,818 10330

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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615,546 - 10328 mRNA_1960 0.83 +0.0
615,671 + 10328 mRNA_1960 0.89 +0.9
615,691 + 10328 mRNA_1960 0.90 +0.1
615,973 + -0.4
616,087 - +0.6
616,101 + -0.7
616,108 + +1.6
616,379 + -0.4
616,380 - +0.5
616,383 - +1.9
616,389 - -0.2
616,398 - +0.6
616,406 + +0.1
616,433 - -0.3
616,532 + 10329 mRNA_1961 0.18 +0.3
616,691 - 10329 mRNA_1961 0.36 +0.5

Or see this region's nucleotide sequence