Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1989

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10357 and 10358 are separated by 116 nucleotides mRNA_1989: 10357 - KOG0551 Hsp90 co-chaperone CNS1 (contains TPR repeats), at 682,690 to 684,207 10357 mRNA_1990: 10358 - HMMPfam-PPR repeat-PF01535,HMMPfam-Pentatricopeptide repeat domain-PF13812,ProSiteProfiles-Pentatricopeptide (PPR) repeat profile.-PS51375,TIGRFAM-PPR pentatricopeptide repeat domain-TIGR00756, at 684,324 to 686,633 10358

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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681,800 + -0.8
681,822 - -1.2
681,822 - -2.7
681,908 + +0.7
681,952 - -1.2
681,982 + -1.3
681,987 + -0.7
681,989 + +0.6
682,079 - -0.9
682,094 + +0.8
682,104 - +0.4
682,106 - -0.3
682,107 + +0.9
682,121 + -0.5
682,124 + +0.7
682,124 - -0.0
682,148 - -1.9
682,258 + -0.3
682,277 - -0.6
682,280 - -0.6
682,297 - -0.9
682,305 + -1.4
682,313 - -1.7
682,319 + -1.3
682,417 - -0.5
682,418 + -0.6
682,432 + -0.3
682,435 - -0.8
682,441 - -0.1
682,451 + +0.2
682,454 + +2.7
682,459 + -0.7
682,469 + +2.0
682,471 - -0.3
682,473 - -0.6
682,473 - +2.6
682,475 + -0.1
682,476 + -0.5
682,484 - -1.2
682,492 - -0.7
682,493 - -0.6
682,507 - -1.1
682,521 + -1.0
682,585 - +0.6
682,605 - +0.0
682,611 - -0.6
682,612 - -0.2
682,616 - -1.4
682,632 - -0.3
682,642 + +0.3
682,643 - +1.4
682,645 + -0.3
682,647 - -0.5
682,650 - -0.0
682,653 + -0.4
682,659 + +0.5
682,661 - -1.3
682,668 + +1.3
684,248 - +0.4
684,252 - +0.2
684,267 + +3.2
684,274 - -1.2

Or see this region's nucleotide sequence