Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1995

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10362 and 10363 are separated by 930 nucleotides10363 and 10364 are separated by 219 nucleotides mRNA_1994: 10362 - K03235 EF3, TEF3 elongation factor 3, at 695,063 to 698,759 10362 mRNA_1995: 10363 - KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b, at 699,690 to 700,377 10363 mRNA_1996: 10364 - KOG0379 Kelch repeat-containing proteins, at 700,597 to 701,909 10364

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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698,822 + +0.2
699,410 - -0.7
699,418 + +1.0
699,707 + +2.1
699,843 - 10363 mRNA_1995 0.22 +1.1
699,942 - 10363 mRNA_1995 0.37 +0.5
700,004 + 10363 mRNA_1995 0.46 -0.4
700,441 + -0.4
700,476 + -0.4
700,538 + -0.2
700,745 - 10364 mRNA_1996 0.11 +0.1
701,029 - 10364 mRNA_1996 0.33 -1.8
701,042 - 10364 mRNA_1996 0.34 +1.8
701,185 + 10364 mRNA_1996 0.45 +0.6

Or see this region's nucleotide sequence