Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2024

Experiment: 40 hrs Median Buoyancy

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	Sysname	Fraction	40 hrs Median Buoyancy
769,267	+	10391	mRNA_2023	0.70	+0.1
769,452	-	10391	mRNA_2023	0.77	+1.7
769,752	+	10391	mRNA_2023	0.90	+1.2
769,860	-				-0.9
770,012	-				+1.1
770,015	-				-1.4
770,024	+				+0.7
770,032	-				-0.0
770,033	+				+0.2
770,052	+				+0.6
770,052	+				-1.1
770,177	-				+0.8
770,184	+				-1.2
770,187	-				-0.0
770,464	-				+0.8
770,745	-	10392	mRNA_2024	0.17	+0.1
770,908	-	10392	mRNA_2024	0.22	+0.2
771,044	+	10392	mRNA_2024	0.26	-0.7
771,341	-	10392	mRNA_2024	0.35	-0.0
771,354	+	10392	mRNA_2024	0.35	+0.7
771,502	+	10392	mRNA_2024	0.40	-0.9
771,633	+	10392	mRNA_2024	0.44	+0.5
771,655	-	10392	mRNA_2024	0.44	+0.1
771,722	-	10392	mRNA_2024	0.46	-0.0
772,031	+	10392	mRNA_2024	0.56	-0.1
772,947	-	10392	mRNA_2024	0.83	-0.1
773,452	-				+1.2
773,518	+				+0.2
773,670	-				-0.4
773,672	+				+0.1
773,808	-				+1.0
773,832	-				-1.5
773,836	-				-0.2
773,843	-				+0.3
773,843	+				-2.4
773,850	+				+1.0
773,864	-				+0.8
773,981	-				+0.4
773,997	+				+0.1
774,001	+				+0.4
774,117	-				+1.3
774,121	-				+2.9
774,147	+				-0.3
774,263	+	10393	mRNA_2025	0.13	-0.1
774,306	+	10393	mRNA_2025	0.15	-0.2
774,388	-	10393	mRNA_2025	0.18	+0.5
774,416	-	10393	mRNA_2025	0.19	-0.4
774,440	-	10393	mRNA_2025	0.20	+0.6
774,441	+	10393	mRNA_2025	0.20	+0.3
774,441	+	10393	mRNA_2025	0.20	-0.8