Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2027

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10394 and 10395 are separated by 307 nucleotides10395 and 10396 are separated by 958 nucleotides mRNA_2026: 10394 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 776,938 to 779,956 10394 mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780,264 to 781,182 10395 mRNA_2028: 10396 - HMMPfam-TENA/THI-4/PQQC family-PF03070,SUPERFAMILY--SSF48613, at 782,141 to 783,596 10396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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779,414 - 10394 mRNA_2026 0.82 -0.3
779,703 - +1.2
779,719 - -0.2
779,729 + +0.8
779,832 + -0.2
779,841 - -0.2
779,849 - -0.3
780,011 - +0.7
780,011 + +1.8
780,025 + -0.9
780,026 - +0.2
780,027 + -0.1
780,038 - +0.6
780,041 + -0.2
780,050 + +0.8
780,061 + +0.1
780,174 - -0.4
780,177 - -0.2
781,229 + -0.8
781,478 + +0.3
781,493 + +1.2
781,503 + +0.8
781,520 + +0.9
781,678 + +0.5
781,768 - +1.5
781,791 - +0.0
781,807 - +0.8
781,811 + +1.4
781,900 - +2.7
781,917 - +0.7
781,927 + +1.4
781,932 - +0.7
781,936 + +1.9
782,075 - -0.4
782,082 + +1.2
782,084 + -0.3
782,085 - -0.2
782,085 - -0.3
782,086 - +2.5
782,092 + -0.3
782,096 + +1.1
782,097 + -0.1
782,123 + +0.7
782,124 - -0.2

Or see this region's nucleotide sequence