Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2030

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10397 and 10398 are separated by 288 nucleotides mRNA_2029: 10397 - K07088 K07088 uncharacterized protein, at 784,732 to 786,233 10397 mRNA_2030: 10398 - KOG2260 Cell division cycle 37 protein, CDC37, at 786,522 to 787,329 10398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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785,699 + 10397 mRNA_2029 0.64 +1.9
785,701 - 10397 mRNA_2029 0.65 +0.5
785,702 + 10397 mRNA_2029 0.65 +0.2
785,857 + 10397 mRNA_2029 0.75 +0.9
786,329 + -0.2
786,348 - +0.5
786,627 - 10398 mRNA_2030 0.13 -1.6
786,716 + 10398 mRNA_2030 0.24 +0.2
786,807 - 10398 mRNA_2030 0.35 -0.4
786,874 + 10398 mRNA_2030 0.44 +0.2
787,075 - 10398 mRNA_2030 0.68 +1.2
787,101 - 10398 mRNA_2030 0.72 -0.4
787,225 - 10398 mRNA_2030 0.87 +0.3
787,269 - +0.9
787,554 + +0.9
787,761 + +0.3
787,919 + -0.0
788,006 + +1.3
788,008 - -1.4
788,070 - -1.3
788,088 + -0.5

Or see this region's nucleotide sequence