Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2036

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10403 and 10404 are separated by 119 nucleotides10404 and 10405 are separated by 771 nucleotides mRNA_2035: 10403 - K14824 ERB1, BOP1 ribosome biogenesis protein ERB1, at 801,171 to 804,014 10403 mRNA_2036: 10404 - HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199, at 804,134 to 805,617 10404 mRNA_2037: 10405 - Hypothetical Protein, at 806,389 to 807,325 10405

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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804,209 + -1.3
804,368 - 10404 mRNA_2036 0.16 +0.7
804,563 + 10404 mRNA_2036 0.29 -0.1
804,695 + 10404 mRNA_2036 0.38 +2.9
804,856 + 10404 mRNA_2036 0.49 +0.2
804,863 + 10404 mRNA_2036 0.49 +2.4
805,257 - 10404 mRNA_2036 0.76 +2.1
805,279 + 10404 mRNA_2036 0.77 +1.1
805,799 + +0.9
806,109 - +1.1
806,122 - +2.3
806,129 + -1.0
806,251 - +0.5
806,259 - +0.0
806,358 - -0.7
806,366 + +0.4
806,403 + -0.5
806,482 + -0.1
806,531 + 10405 mRNA_2037 0.15 -0.2
806,595 - 10405 mRNA_2037 0.22 +0.6
806,596 - 10405 mRNA_2037 0.22 +1.2
806,600 + 10405 mRNA_2037 0.23 -1.1
806,613 + 10405 mRNA_2037 0.24 +1.6

Or see this region's nucleotide sequence