Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2039

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10406 and 10407 are separated by 236 nucleotides10407 and 10408 are separated by 333 nucleotides mRNA_2038: 10406 - Hypothetical Protein, at 807,338 to 808,315 10406 mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808,552 to 810,897 10407 mRNA_2040: 10408 - K11729 ACAD10 acyl-CoA dehydrogenase family member 10, at 811,231 to 813,728 10408

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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807,559 - 10406 mRNA_2038 0.23 +0.4
807,687 + 10406 mRNA_2038 0.36 -0.2
808,295 + +1.0
808,329 + -0.9
808,335 - +0.1
808,900 + 10407 mRNA_2039 0.15 -0.2
809,927 + 10407 mRNA_2039 0.59 -0.0
810,455 - 10407 mRNA_2039 0.81 +0.5
810,465 + 10407 mRNA_2039 0.82 +1.8
810,509 - 10407 mRNA_2039 0.83 -0.3
810,735 - -0.0
810,817 + +0.7
811,068 + +0.5
811,081 + -0.1
811,081 + +1.9
811,084 - +0.8
811,116 - +0.2
811,117 - +2.8
811,138 - +0.2
811,140 + +0.2
811,140 - +0.7
811,225 - -0.1
811,247 + +2.6
811,269 + +0.1
811,547 - 10408 mRNA_2040 0.13 -0.9
811,549 + 10408 mRNA_2040 0.13 +1.5
811,553 + 10408 mRNA_2040 0.13 +2.1
811,842 - 10408 mRNA_2040 0.24 -0.6
811,845 + 10408 mRNA_2040 0.25 +0.6

Or see this region's nucleotide sequence