Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2111

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10478 and 10479 are separated by 465 nucleotides10479 and 10480 are separated by 121 nucleotides10480 and 10481 are separated by 376 nucleotides mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99,075 to 100,834 10478 mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101,300 to 102,530 10479 mRNA_2112: 10480 - Hypothetical Protein, at 102,652 to 103,100 10480 mRNA_2113: 10481 - KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors, at 103,477 to 104,004 10481

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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100,366 - 10478 mRNA_2110 0.73 +2.1
100,579 - 10478 mRNA_2110 0.85 +0.2
100,641 - 10478 mRNA_2110 0.89 -0.1
101,102 - +1.6
101,113 - +0.3
101,113 - -0.0
101,138 + +0.1
101,141 - +0.3
101,242 - -0.8
101,262 + -0.1
102,137 + 10479 mRNA_2111 0.68 +2.0
102,406 - 10479 mRNA_2111 0.90 +1.0
102,563 - +0.3
102,645 - +0.4
102,702 - 10480 mRNA_2112 0.11 +2.3
102,753 - 10480 mRNA_2112 0.22 +1.2
102,828 - 10480 mRNA_2112 0.39 +0.4
102,957 - 10480 mRNA_2112 0.68 +3.0
102,996 - 10480 mRNA_2112 0.77 +0.4
102,998 - 10480 mRNA_2112 0.77 +0.5
103,015 + 10480 mRNA_2112 0.81 +0.4
103,015 + 10480 mRNA_2112 0.81 +0.3
103,024 - 10480 mRNA_2112 0.83 -0.8
103,028 + 10480 mRNA_2112 0.84 +2.3
103,052 - 10480 mRNA_2112 0.89 +1.5
103,129 + +0.3
103,166 + +0.1
103,167 - +1.3
103,171 + +0.6
103,171 - +1.0
103,180 + +0.3
103,182 - +0.2
103,313 + +0.2
103,329 - +1.1
103,348 - -2.2
103,413 + +1.5
103,447 - +0.8
103,477 - +1.3

Or see this region's nucleotide sequence