Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2127

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10494 and 10495 are separated by 349 nucleotides10495 and 10496 are separated by 469 nucleotides mRNA_2126: 10494 - Hypothetical Protein, at 130,943 to 133,180 10494 mRNA_2127: 10495 - BLAST putative lipase ATG15 [Grifola frondosa], at 133,530 to 135,409 10495 mRNA_2128: 10496 - Hypothetical Protein, at 135,879 to 136,766 10496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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132,535 - 10494 mRNA_2126 0.71 +0.6
132,853 + 10494 mRNA_2126 0.85 -0.5
133,104 + -1.5
133,114 - +2.4
133,286 + +2.0
133,451 - -1.2
133,453 + -0.1
133,735 + 10495 mRNA_2127 0.11 -1.6
133,743 + 10495 mRNA_2127 0.11 +0.1
133,847 + 10495 mRNA_2127 0.17 -0.7
133,883 - 10495 mRNA_2127 0.19 -1.1
134,255 - 10495 mRNA_2127 0.39 +0.4
134,270 + 10495 mRNA_2127 0.39 +0.7
134,289 - 10495 mRNA_2127 0.40 -1.3
134,327 - 10495 mRNA_2127 0.42 +0.5
134,487 + 10495 mRNA_2127 0.51 +1.1
134,629 - 10495 mRNA_2127 0.58 +1.8
134,735 - 10495 mRNA_2127 0.64 +0.6
134,867 + 10495 mRNA_2127 0.71 +0.1
134,912 + 10495 mRNA_2127 0.74 +1.7
135,150 - 10495 mRNA_2127 0.86 +0.3
135,156 - 10495 mRNA_2127 0.86 -0.4
135,755 - -0.1
135,934 - -0.2

Or see this region's nucleotide sequence