Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2158

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10525 and 10526 are separated by 374 nucleotides10526 and 10527 are separated by 357 nucleotides mRNA_2157: 10525 - Hypothetical Protein, at 207,525 to 208,737 10525 mRNA_2158: 10526 - K14550 UTP10, HEATR1 U3 small nucleolar RNA-associated protein 10, at 209,112 to 215,821 10526 mRNA_2159: 10527 - K03263 EIF5A translation initiation factor 5A, at 216,179 to 217,701 10527

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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208,173 - 10525 mRNA_2157 0.53 +0.7
208,389 + 10525 mRNA_2157 0.71 +1.4
208,925 - -1.0
208,967 - -0.5
208,970 + +0.7
208,970 - -0.3
208,973 + +0.6
208,975 - +2.7
208,981 - +0.4
208,993 - -1.7
208,998 + -0.8
209,006 + +1.1
209,011 - -0.1
210,609 - 10526 mRNA_2158 0.22 -0.4
215,747 - +0.3
215,890 + -0.8
215,897 - +0.3
215,909 + +0.0
215,909 + +0.1
216,089 + +0.3
216,101 - -1.2
216,101 + +0.9
216,107 - -0.3
216,108 - +0.6
216,117 - -0.4
216,119 + -0.3
216,122 + -0.6
216,123 + +1.9
216,127 + -1.3

Or see this region's nucleotide sequence