Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2208

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10575 and 10576 are separated by 238 nucleotides10576 and 10577 are separated by 678 nucleotides mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353,107 to 355,052 10575 mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355,291 to 358,512 10576 mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359,191 to 363,010 10577

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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354,382 - 10575 mRNA_2207 0.66 -0.1
354,656 - 10575 mRNA_2207 0.80 +0.6
354,681 - 10575 mRNA_2207 0.81 +0.2
354,919 - +2.9
354,950 - +0.5
355,085 + +1.9
355,199 + -0.5
355,215 - +0.3
355,429 - +0.2
355,655 - 10576 mRNA_2208 0.11 -0.5
355,946 - 10576 mRNA_2208 0.20 +0.2
356,007 + 10576 mRNA_2208 0.22 -0.1
356,109 + 10576 mRNA_2208 0.25 +0.4
356,112 + 10576 mRNA_2208 0.25 +0.4
356,422 + 10576 mRNA_2208 0.35 -2.1
356,832 + 10576 mRNA_2208 0.48 +0.2
356,999 + 10576 mRNA_2208 0.53 +0.5
357,222 - 10576 mRNA_2208 0.60 +1.5
357,454 + 10576 mRNA_2208 0.67 +1.3
357,558 + 10576 mRNA_2208 0.70 +0.1
358,177 + 10576 mRNA_2208 0.90 +0.1
358,265 + +0.0
358,463 + +1.8
358,508 - +0.9
358,584 + -0.0
358,718 - +0.7
358,889 + -0.0
358,895 - -0.4
358,915 + +1.5
358,942 - +0.6
359,064 + -0.5
359,164 - -0.2
359,195 + +0.5
359,240 + -0.0
359,312 - -2.1

Or see this region's nucleotide sequence