Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2217

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10584 and 10585 are separated by 794 nucleotides10585 and 10586 are separated by 152 nucleotides mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380,175 to 381,550 10584 mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382,345 to 384,541 10585 mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384,694 to 386,223 10586

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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381,456 - -0.6
381,464 + +0.1
381,468 + +2.4
381,472 - +1.7
381,472 + -1.1
381,474 + -0.8
381,482 + -0.7
381,559 - +0.0
381,586 - +0.2
381,593 - +0.5
381,595 - +1.6
381,604 + +0.7
381,612 - -0.3
381,613 + -0.1
381,614 + +0.2
381,614 + +0.2
381,618 + +0.3
381,620 + +1.1
381,624 - -0.7
381,626 + -0.2
381,626 - +0.1
381,628 + +0.5
381,628 + -0.1
381,700 + +0.2
381,703 - +1.3
381,709 - +0.6
381,709 - -1.9
381,711 + +1.2
381,716 + +0.9
381,723 + +2.8
381,725 - +0.6
381,728 + +0.0
381,729 + -0.1
381,737 - +0.2
381,740 + -0.3
381,746 + +0.3
381,746 + +1.4
381,779 + -1.3
381,783 + +0.3
381,906 + -0.0
382,005 - -1.8
382,035 - +0.8
382,430 - -0.1
382,500 - -0.4
382,740 - 10585 mRNA_2217 0.18 -0.4
383,287 + 10585 mRNA_2217 0.43 +0.2
383,742 - 10585 mRNA_2217 0.64 -1.2
383,882 + 10585 mRNA_2217 0.70 +0.1
383,904 - 10585 mRNA_2217 0.71 +0.4
384,124 - 10585 mRNA_2217 0.81 +0.8
384,288 + 10585 mRNA_2217 0.88 +0.9
384,459 + +0.3
384,511 + +0.5
385,121 + 10586 mRNA_2218 0.28 +2.1
385,242 - 10586 mRNA_2218 0.36 +0.3
385,274 + 10586 mRNA_2218 0.38 +0.1
385,428 - 10586 mRNA_2218 0.48 +0.3
385,443 - 10586 mRNA_2218 0.49 -0.0

Or see this region's nucleotide sequence