Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2220

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10587 and 10588 are separated by 406 nucleotides10588 and 10589 are separated by 281 nucleotides mRNA_2219: 10587 - Hypothetical Protein, at 386,723 to 388,300 10587 mRNA_2220: 10588 - K14411 MSI RNA-binding protein Musashi, at 388,707 to 390,951 10588 mRNA_2221: 10589 - KOG0379 Kelch repeat-containing proteins, at 391,233 to 393,813 10589

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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387,783 - 10587 mRNA_2219 0.67 +0.3
387,800 + 10587 mRNA_2219 0.68 -0.5
388,047 - 10587 mRNA_2219 0.84 -0.5
388,123 + 10587 mRNA_2219 0.89 -0.1
388,227 - -0.2
388,229 + -0.5
388,235 - -0.3
388,242 + +0.6
388,408 - -0.3
388,533 + +1.3
388,665 - +0.1
391,152 + +0.0
391,165 - -0.9
391,180 + -0.0
391,186 - +1.0
391,198 + +0.4
391,467 + +0.6
391,573 + 10589 mRNA_2221 0.13 +0.0
391,586 + 10589 mRNA_2221 0.14 -0.9

Or see this region's nucleotide sequence