Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2229

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10597 and 10598 are separated by 679 nucleotides mRNA_2229: 10597 - HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067, at 416,574 to 419,223 10597 mRNA_2230: 10598 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 419,903 to 421,996 10598

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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416,151 - -1.2
416,233 + +1.5
416,536 - +0.7
416,638 - -1.2
416,818 + +0.9
416,981 - 10597 mRNA_2229 0.15 +1.8
417,272 + 10597 mRNA_2229 0.26 +0.2
417,765 - 10597 mRNA_2229 0.45 +0.9
418,450 - 10597 mRNA_2229 0.71 +0.2
418,458 - 10597 mRNA_2229 0.71 -1.2
419,183 - +1.2
420,067 - -1.0

Or see this region's nucleotide sequence