Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2234

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10602 and 10603 are separated by 656 nucleotides mRNA_2234: 10602 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 428,001 to 429,735 10602 mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430,392 to 432,550 10603

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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427,142 + +0.3
427,142 + +0.4
427,152 + -0.9
427,162 + +0.2
427,221 + +1.0
427,321 - +0.5
427,333 + -0.2
427,352 + +0.3
427,353 + +0.5
427,356 - -0.3
427,363 - -0.3
427,373 + +0.1
427,396 + +1.3
427,458 - +2.9
427,462 - +0.0
427,463 + -0.8
427,482 + +0.3
427,784 - -0.2
427,821 - +1.0
427,926 - +1.3
427,939 + +0.8
429,483 + 10602 mRNA_2234 0.85 -2.1
429,850 + -2.6
430,135 - -0.8
430,146 - -0.2
430,150 + +1.5
430,278 + +0.2
430,279 + +1.4
430,298 + +0.2
430,299 - -0.9
430,303 - +1.6
430,314 + +2.7
430,317 + +0.2
430,504 + +1.3

Or see this region's nucleotide sequence