Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2241

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10608 and 10609 are separated by 492 nucleotides10609 and 10610 are separated by 466 nucleotides mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440,002 to 443,977 10608 mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444,470 to 447,596 10609 mRNA_2242: 10610 - Hypothetical Protein, at 448,063 to 449,685 10610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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443,538 - 10608 mRNA_2240 0.89 +0.7
443,567 - 10608 mRNA_2240 0.90 +1.2
443,681 - -0.3
443,903 + +1.3
443,951 - +1.7
443,974 - +0.8
443,981 - +0.5
443,981 + +0.0
443,984 + +1.8
444,274 + -0.2
444,296 - -0.1
444,448 + -3.5
444,459 - +0.9
444,466 + +0.1
445,831 - 10609 mRNA_2241 0.44 -0.1
445,945 - 10609 mRNA_2241 0.47 +0.4
446,035 + 10609 mRNA_2241 0.50 -0.3
446,081 - 10609 mRNA_2241 0.52 +1.2
446,211 - 10609 mRNA_2241 0.56 +0.9
446,249 - 10609 mRNA_2241 0.57 +1.7
446,829 + 10609 mRNA_2241 0.75 +2.3
447,221 - 10609 mRNA_2241 0.88 +0.5
447,245 - 10609 mRNA_2241 0.89 +0.6
447,345 - -0.7
447,532 - +0.1
447,548 - -1.4
447,585 + -0.5
447,666 + +0.2
447,666 + +0.2
447,667 - +0.8
447,669 + +2.3
447,671 - -0.1
447,683 - +0.7
447,689 - +1.6
447,800 + +0.6
447,808 + +0.4
447,811 - +0.3
447,840 - -0.2
447,884 + -0.6
447,892 + +0.0
447,928 + -2.0
448,015 - +1.0
448,031 - +0.3
448,043 - +0.2
448,044 + +0.2
448,044 - +0.5
448,053 - -0.5
448,073 + +1.1
448,183 + +1.1
448,184 + +0.3
448,210 + +1.2
448,217 + +0.9
448,240 - 10610 mRNA_2242 0.11 +2.5
448,247 - 10610 mRNA_2242 0.11 +0.4
448,329 - 10610 mRNA_2242 0.16 +0.8
448,335 + 10610 mRNA_2242 0.17 +0.6
448,339 - 10610 mRNA_2242 0.17 +1.7
448,353 + 10610 mRNA_2242 0.18 +0.9
448,353 + 10610 mRNA_2242 0.18 -0.1
448,358 - 10610 mRNA_2242 0.18 +1.0
448,364 - 10610 mRNA_2242 0.19 +1.5
448,384 + 10610 mRNA_2242 0.20 +2.6
448,403 - 10610 mRNA_2242 0.21 -0.2
448,446 + 10610 mRNA_2242 0.24 +0.1
448,478 + 10610 mRNA_2242 0.26 -1.2
448,483 - 10610 mRNA_2242 0.26 -0.1
448,494 + 10610 mRNA_2242 0.27 -0.8
448,497 - 10610 mRNA_2242 0.27 -0.7
448,502 + 10610 mRNA_2242 0.27 -0.2
448,507 + 10610 mRNA_2242 0.27 +0.4

Or see this region's nucleotide sequence