Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2245

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10612 and 10613 are separated by 943 nucleotides10613 and 10614 are separated by 362 nucleotides mRNA_2244: 10612 - KOG4120 G/T mismatch-specific thymine DNA glycosylase, at 452,902 to 454,246 10612 mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455,190 to 456,884 10613 mRNA_2246: 10614 - K00026 MDH2 malate dehydrogenase, at 457,247 to 458,914 10614

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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454,227 - +0.0
454,238 - +0.3
454,238 - +0.4
454,356 - -0.5
454,399 + +1.5
454,501 - -0.1
454,509 + +0.5
454,787 - -1.1
454,787 - -0.1
454,798 + +0.0
454,804 - +1.8
454,812 + +1.0
454,814 - -1.1
454,814 - -2.2
454,838 - +0.2
454,838 - -0.8
454,838 - -0.1
454,846 + +0.5
454,852 - -0.1
454,873 + -0.2
454,874 - +0.2
454,876 + -0.1
454,877 + -0.1
454,879 + -1.4
454,916 - +0.5
454,932 - -0.2
454,933 + +0.2
454,933 + +0.2
454,937 + +1.4
454,937 + +2.0
454,939 + +0.4
454,939 - +1.3
454,939 - +1.5
454,939 + +0.2
454,940 - +0.8
454,947 + +0.0
454,948 + -1.8
454,949 + +1.1
454,950 + +0.2
454,951 - +0.9
454,958 - -0.9
454,969 + -0.3
454,973 + +2.1
454,984 - +1.0
454,984 - +0.4
455,081 - +0.5
455,086 + +0.2
455,088 - +0.3
455,104 - +0.8
455,104 - +0.2
455,104 - +0.0
455,106 - +0.7
455,116 - +0.3
455,122 + -0.2
455,123 + -1.3
455,123 - +0.6
455,123 + -0.2
455,124 + +0.3
456,870 - -0.1
456,985 - +0.0
457,022 - -0.8
457,023 - -0.3
457,055 + +0.7
457,062 + -1.6
457,192 - -0.4
457,279 + +0.9
457,307 + -2.5
457,335 - -0.8

Or see this region's nucleotide sequence