Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2249

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10616 and 10617 are separated by 348 nucleotides10617 and 10618 are separated by 151 nucleotides mRNA_2248: 10616 - K01338 lon ATP-dependent Lon protease, at 460,381 to 463,216 10616 mRNA_2249: 10617 - K10753 ASF1 histone chaperone ASF1, at 463,565 to 464,577 10617 mRNA_2250: 10618 - HMMPfam-Apolipoprotein O-PF09769, at 464,729 to 465,798 10618

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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462,934 + +0.2
463,151 + -0.4
463,343 + -0.3
463,349 + -0.1
463,619 - +0.9
464,631 + -0.6
464,640 + +1.8
464,649 - +1.4
464,651 + +1.1
464,655 + +0.1
464,658 + -0.9
464,661 + +2.2
464,668 - +1.0
464,835 - -0.1
464,835 - +0.3
464,840 + 10618 mRNA_2250 0.10 +0.5
464,844 + 10618 mRNA_2250 0.11 +0.2
464,845 - 10618 mRNA_2250 0.11 -0.0
464,845 - 10618 mRNA_2250 0.11 +0.7
465,007 + 10618 mRNA_2250 0.26 +0.5
465,142 - 10618 mRNA_2250 0.39 +0.3
465,280 - 10618 mRNA_2250 0.51 +0.2
465,325 + 10618 mRNA_2250 0.56 +2.4
465,446 - 10618 mRNA_2250 0.67 +1.9
465,560 - 10618 mRNA_2250 0.78 +1.1
465,572 + 10618 mRNA_2250 0.79 -2.0
465,572 + 10618 mRNA_2250 0.79 +1.1

Or see this region's nucleotide sequence