Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2259

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10626 and 10627 are separated by 299 nucleotides10627 and 10628 are separated by 269 nucleotides mRNA_2258: 10626 - K04627 STE3 pheromone a factor receptor, at 476,602 to 477,940 10626 mRNA_2259: 10627 - K02933 RP-L6, MRPL6, rplF large subunit ribosomal protein L6, at 478,240 to 479,053 10627 mRNA_2260: 10628 - K03027 RPC40, POLR1C DNA-directed RNA polymerases I and III subunit RPAC1, at 479,323 to 480,652 10628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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477,279 + 10626 mRNA_2258 0.51 -1.1
477,300 + 10626 mRNA_2258 0.52 +0.4
477,327 + 10626 mRNA_2258 0.54 +0.4
477,469 + 10626 mRNA_2258 0.65 -0.2
477,610 + 10626 mRNA_2258 0.75 -1.3
477,619 + 10626 mRNA_2258 0.76 +0.8
477,620 + 10626 mRNA_2258 0.76 -0.5
477,763 + 10626 mRNA_2258 0.87 +0.9
477,882 + -0.3
477,901 + +0.4
477,906 - +0.7
477,985 - +0.1
477,989 - +3.3
478,023 - +0.6
478,052 - -0.5
478,054 - +0.6
478,055 - -0.1
478,057 - -0.9
478,064 - +0.0
478,067 + -0.0
478,067 - -0.9
478,069 - -0.6
478,075 - -0.4
478,096 - -0.2
478,099 - +1.7
478,100 - -0.2
478,104 - +0.2
478,105 - +0.1
478,105 + +0.8
478,109 + +0.1
478,115 + +0.9
478,117 + -0.3
478,121 + +0.1
478,122 + -1.0
478,122 + -0.1
478,126 - +0.9
478,128 - +0.8
478,279 - -0.6
479,096 - -0.8
479,103 - -0.1
479,109 - +1.1
479,111 - -0.7

Or see this region's nucleotide sequence