Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2287

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10654 and 10655 are separated by 943 nucleotides mRNA_2286: 10654 - Hypothetical Protein, at 528,229 to 530,268 10654 mRNA_2287: 10655 - KOG3870 Uncharacterized conserved protein, at 531,212 to 533,990 10655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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530,363 - +0.2
530,368 - +0.1
530,372 + -0.6
530,391 + -0.9
530,486 - +1.8
530,562 - +0.1
530,575 + -0.3
530,592 - -1.1
530,601 + -0.4
530,610 + -0.7
530,613 - -1.0
530,639 - -1.1
530,639 + -2.0
530,652 + +0.1
530,678 + -0.9
530,684 + +0.1
530,708 + -0.3
530,714 + +0.2
530,714 + +0.3
530,726 - +1.5
530,727 - -0.2
530,727 + -0.3
530,728 + +0.2
530,771 - +0.3
530,824 - +0.8
530,835 + +0.5
530,840 - +0.1
530,898 + -1.2
530,899 - +1.1
530,900 - -0.8
530,900 - +0.5
530,904 + -0.2
530,904 + -1.0
530,904 - +0.4
530,905 + +1.0
530,911 - +0.3
530,914 + +0.3
530,923 + -0.5
530,923 - +1.2
530,923 + +0.5
530,923 - -0.0
530,928 - +0.4
530,929 + -0.5
530,929 + -0.4
530,930 + +0.5
530,932 - +0.5
530,933 + +1.1
530,934 - +0.1
530,939 - +1.2
530,944 + +1.1
530,945 + -0.5
530,945 + -0.6
530,952 - -2.6
530,958 + +0.8
530,959 + -0.3
530,961 - +1.2
530,967 + +0.9
531,036 + +0.7
531,059 - -0.2
531,061 + +0.7
531,070 - -0.4
531,097 + -1.2
531,101 - -0.5
531,109 + +0.3
531,117 + +0.1
531,117 - +0.4
531,121 + +0.0
531,126 + +1.5
531,129 + -0.2
531,132 + -0.9
531,199 - -0.4
531,261 + +1.6
531,264 - -0.2
531,274 + -0.6
531,280 + -0.6
531,411 - -0.2
531,418 - +1.0
531,420 - +0.8
531,446 + +0.0
532,015 + 10655 mRNA_2287 0.29 +1.5
532,026 - 10655 mRNA_2287 0.29 -0.2
532,430 + 10655 mRNA_2287 0.44 -2.2
532,434 + 10655 mRNA_2287 0.44 -0.1
532,462 - 10655 mRNA_2287 0.45 +1.9
532,590 - 10655 mRNA_2287 0.50 -0.5
532,760 - 10655 mRNA_2287 0.56 +0.3
532,878 + 10655 mRNA_2287 0.60 -0.9
533,307 + 10655 mRNA_2287 0.75 -0.2
533,727 + -1.3
533,733 + -0.2
533,734 - -0.8
533,891 - -0.2
534,036 + -0.3
534,784 + +1.1

Or see this region's nucleotide sequence