Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2314

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10681 and 10682 are separated by 183 nucleotides10682 and 10683 are separated by 582 nucleotides mRNA_2313: 10681 - K13343 PEX14 peroxin-14, at 584,223 to 585,492 10681 mRNA_2314: 10682 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 585,676 to 588,935 10682 mRNA_2315: 10683 - SUPERFAMILY--SSF160369, at 589,518 to 590,435 10683

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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585,569 - +0.3
585,573 - +0.3
585,577 - -1.0
585,578 - +2.0
585,591 - +0.5
585,591 + +0.2
585,592 + +0.8
585,653 - -0.2
585,653 - +2.1
585,662 - -0.5
585,668 - -0.9
585,774 + +1.4
585,783 + +1.1
585,853 - +1.5
585,934 + -0.0
585,948 - +0.8
586,508 + 10682 mRNA_2314 0.26 -0.1
586,510 - 10682 mRNA_2314 0.26 +0.7
586,650 + 10682 mRNA_2314 0.30 -0.4
586,789 - 10682 mRNA_2314 0.34 +0.8
586,981 + 10682 mRNA_2314 0.40 +3.6
587,101 - 10682 mRNA_2314 0.44 +0.9
587,147 + 10682 mRNA_2314 0.45 +0.3
587,278 + 10682 mRNA_2314 0.49 -0.3
587,356 - 10682 mRNA_2314 0.52 +2.1
587,423 - 10682 mRNA_2314 0.54 +0.7
587,696 - 10682 mRNA_2314 0.62 +0.7
587,712 + 10682 mRNA_2314 0.62 +0.3
587,817 - 10682 mRNA_2314 0.66 +0.0
587,843 + 10682 mRNA_2314 0.66 +0.4
587,899 + 10682 mRNA_2314 0.68 +0.2
588,150 - 10682 mRNA_2314 0.76 -0.5
588,335 - 10682 mRNA_2314 0.82 +1.8
588,555 - 10682 mRNA_2314 0.88 +1.5
588,698 - +0.7
588,858 + -0.5
589,011 - -0.1
589,026 + +0.2
589,036 + +0.6
589,037 + -0.5
589,042 + +1.3
589,165 - +0.4
589,189 + +0.7
589,340 + +0.2
589,482 + -0.1

Or see this region's nucleotide sequence