Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2320

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2320: 10688 - HMMPfam-Carboxylesterase family-PF00135,SUPERFAMILY--SSF53474, at 599,987 to 602,471 10688

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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599,148 - -0.8
599,154 - -0.4
599,154 + +0.6
599,178 - -0.6
599,316 - +0.1
599,317 + +1.7
599,321 - -0.5
599,463 - -1.0
599,868 - -0.5
599,890 + -0.5
599,902 - +0.2
599,905 + +1.3
599,909 + -0.7
600,029 + -0.1
600,064 - +0.3
600,482 - 10688 mRNA_2320 0.20 +2.5
601,187 + 10688 mRNA_2320 0.48 -0.1
601,342 - 10688 mRNA_2320 0.55 -0.3
601,409 + 10688 mRNA_2320 0.57 +1.2
601,636 - 10688 mRNA_2320 0.66 -0.5
601,639 + 10688 mRNA_2320 0.66 -0.1
602,175 - 10688 mRNA_2320 0.88 +0.8
602,188 + 10688 mRNA_2320 0.89 -0.2
602,209 - 10688 mRNA_2320 0.89 +0.9
602,218 + 10688 mRNA_2320 0.90 -0.6
602,497 + +0.2
602,665 + +0.0
602,674 - -0.0
602,700 - +1.1
602,705 + +0.9
602,861 + -0.0
603,251 - +1.6

Or see this region's nucleotide sequence