Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2328

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10695 and 10696 are separated by 108 nucleotides mRNA_2327: 10695 - Hypothetical Protein, at 616,454 to 617,684 10695 mRNA_2328: 10696 - KOG0192 Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs, at 617,793 to 619,842 10696

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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616,936 - 10695 mRNA_2327 0.39 -1.2
617,384 - 10695 mRNA_2327 0.76 +0.8
617,541 + 10695 mRNA_2327 0.88 +2.6
617,660 - +1.0
617,664 + +0.5
617,816 + +0.7
617,983 + +0.5
617,986 + +1.0
618,115 + 10696 mRNA_2328 0.16 -0.7
618,138 - 10696 mRNA_2328 0.17 -0.8
618,265 - 10696 mRNA_2328 0.23 +0.4
618,301 + 10696 mRNA_2328 0.25 +0.0
618,401 - 10696 mRNA_2328 0.30 -0.2
618,431 + 10696 mRNA_2328 0.31 +0.2
618,449 - 10696 mRNA_2328 0.32 -1.0
618,457 + 10696 mRNA_2328 0.32 -0.3
618,508 + 10696 mRNA_2328 0.35 +0.3
618,665 - 10696 mRNA_2328 0.43 -0.4
618,841 - 10696 mRNA_2328 0.51 +2.3
618,959 + 10696 mRNA_2328 0.57 -0.4
619,110 + 10696 mRNA_2328 0.64 -2.3
619,189 + 10696 mRNA_2328 0.68 +2.6
619,261 + 10696 mRNA_2328 0.72 -1.5
619,263 + 10696 mRNA_2328 0.72 +0.0
619,296 + 10696 mRNA_2328 0.73 +0.1
619,403 - 10696 mRNA_2328 0.79 -0.1
619,603 + 10696 mRNA_2328 0.88 +2.0
619,604 - 10696 mRNA_2328 0.88 +0.6
619,690 + +1.2
619,742 + -0.2
619,839 + +0.9
619,999 + +1.9
620,020 + +0.3
620,043 - +1.7
620,114 - +0.7
620,288 - -0.4
620,297 - -0.1
620,619 + +1.3
620,714 - +0.7
620,739 + -2.0

Or see this region's nucleotide sequence