Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2334

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10701 and 10702 are separated by 231 nucleotides10702 and 10703 are separated by 130 nucleotides mRNA_2333: 10701 - KOG1159 NADP-dependent flavoprotein reductase, at 642,663 to 645,138 10701 mRNA_2334: 10702 - K17815 EXO5 exonuclease V, at 645,370 to 647,887 10702 mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648,018 to 653,331 10703

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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645,292 - -1.3
645,319 + +0.4
645,327 + +0.7
645,358 - -0.2
645,364 - -1.8
645,458 - +0.4
645,482 + -0.7
645,629 + 10702 mRNA_2334 0.10 +0.0
646,071 + 10702 mRNA_2334 0.28 +0.5
646,084 + 10702 mRNA_2334 0.28 -1.4
646,242 + 10702 mRNA_2334 0.35 -0.4
646,494 - 10702 mRNA_2334 0.45 +0.2
646,780 - 10702 mRNA_2334 0.56 +1.6
646,811 - 10702 mRNA_2334 0.57 -0.9
646,964 - 10702 mRNA_2334 0.63 +1.1
647,088 - 10702 mRNA_2334 0.68 +0.5
647,271 + 10702 mRNA_2334 0.75 +0.3
647,718 + -0.4
647,816 - -1.4
648,233 + -0.6
648,358 + -1.0
648,687 - 10703 mRNA_2335 0.13 -0.3
648,707 - 10703 mRNA_2335 0.13 +0.3

Or see this region's nucleotide sequence