Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2342

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10709 and 10710 are separated by 214 nucleotides10710 and 10711 are separated by 170 nucleotides mRNA_2341: 10709 - K03021 RPC2, POLR3B DNA-directed RNA polymerase III subunit RPC2, at 663,077 to 667,244 10709 mRNA_2342: 10710 - Hypothetical Protein, at 667,459 to 669,644 10710 mRNA_2343: 10711 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 669,815 to 670,967 10711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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667,532 - +0.7
667,551 - +1.1
667,673 + -0.4
667,692 - 10710 mRNA_2342 0.11 +0.8
667,712 - 10710 mRNA_2342 0.12 -2.2
667,715 + 10710 mRNA_2342 0.12 +0.0
667,721 + 10710 mRNA_2342 0.12 +0.0
667,729 - 10710 mRNA_2342 0.12 +1.3
667,799 - 10710 mRNA_2342 0.16 +0.9
667,846 - 10710 mRNA_2342 0.18 -0.1
667,965 - 10710 mRNA_2342 0.23 -0.5
667,976 + 10710 mRNA_2342 0.24 +0.0
667,994 - 10710 mRNA_2342 0.24 -0.4
668,273 - 10710 mRNA_2342 0.37 +1.4
668,282 + 10710 mRNA_2342 0.38 +0.3
668,559 + 10710 mRNA_2342 0.50 -0.9
669,314 - 10710 mRNA_2342 0.85 -0.2
669,337 - 10710 mRNA_2342 0.86 +0.8
669,450 - +0.9
669,693 + +0.5
670,027 - 10711 mRNA_2343 0.18 +2.4
670,315 + 10711 mRNA_2343 0.43 +0.8
670,592 + 10711 mRNA_2343 0.67 -0.2

Or see this region's nucleotide sequence