Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2381

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10748 and 10749 are separated by 647 nucleotides10749 and 10750 are separated by 130 nucleotides mRNA_2380: 10748 - K07889 RAB5C Ras-related protein Rab-5C, at 756,377 to 757,308 10748 mRNA_2381: 10749 - KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins, at 757,956 to 760,560 10749 mRNA_2382: 10750 - HMMPfam-Zinc-binding loop region of homing endonuclease-PF05551,SUPERFAMILY--SSF54060, at 760,691 to 762,074 10750

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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757,025 - 10748 mRNA_2380 0.70 -0.0
757,303 + -0.7
757,461 - +0.2
757,607 + -0.3
757,630 + -0.1
757,715 - -0.3
757,865 - -0.6
757,877 + -0.3
757,879 - +1.8
757,881 - +0.2
758,352 + 10749 mRNA_2381 0.15 -0.2
759,910 - 10749 mRNA_2381 0.75 +0.2
760,049 - 10749 mRNA_2381 0.80 -1.3
760,347 - +0.3
761,121 - 10750 mRNA_2382 0.31 -0.4

Or see this region's nucleotide sequence