Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2386

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10753 and 10754 are separated by 471 nucleotides10754 and 10755 are separated by 196 nucleotides mRNA_2385: 10753 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 765,791 to 769,298 10753 mRNA_2386: 10754 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 769,770 to 774,280 10754 mRNA_2387: 10755 - K17781 TIM13 mitochondrial import inner membrane translocase subunit TIM13, at 774,477 to 775,750 10755

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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769,065 - +0.4
769,553 - -0.3
769,575 - +1.2
769,576 + +0.6
769,618 + -1.2
769,619 + +1.9
769,751 + -0.2
769,751 + -0.2
769,755 + +0.4
770,055 + +2.0
770,191 - -0.3
770,788 - 10754 mRNA_2386 0.23 -0.2
771,048 + 10754 mRNA_2386 0.28 +0.0
771,095 - 10754 mRNA_2386 0.29 +2.0
771,936 + 10754 mRNA_2386 0.48 +0.7
772,531 - 10754 mRNA_2386 0.61 +1.1
772,534 - 10754 mRNA_2386 0.61 +1.4
773,378 + 10754 mRNA_2386 0.80 -0.4
773,553 + 10754 mRNA_2386 0.84 +0.5
773,580 + 10754 mRNA_2386 0.84 +0.6
774,285 - +0.1
774,323 + +0.8
774,501 + -1.0
774,883 - 10755 mRNA_2387 0.32 +0.0
774,884 + 10755 mRNA_2387 0.32 +0.5
775,177 - 10755 mRNA_2387 0.55 -1.0
775,260 + 10755 mRNA_2387 0.61 +0.7

Or see this region's nucleotide sequence