Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2447

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10814 and 10815 are separated by 266 nucleotides10815 and 10816 are separated by 872 nucleotides mRNA_2446: 10814 - K11396 YNG2, EAF4 chromatin modification-related protein YNG2, at 153,501 to 155,365 10814 mRNA_2447: 10815 - Hypothetical Protein, at 155,632 to 156,162 10815 mRNA_2448: 10816 - Hypothetical Protein, at 157,035 to 159,573 10816

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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155,416 - -0.7
155,432 + -1.0
155,434 + -0.6
155,453 + +0.1
155,460 + +0.7
155,463 + -0.0
155,568 + +0.1
155,672 + -0.2
155,714 - 10815 mRNA_2447 0.15 +1.3
155,740 + 10815 mRNA_2447 0.20 +0.1
155,743 - 10815 mRNA_2447 0.21 -0.6
155,750 + 10815 mRNA_2447 0.22 -0.5
155,772 - 10815 mRNA_2447 0.26 +0.5
155,781 + 10815 mRNA_2447 0.28 -0.9
155,859 - 10815 mRNA_2447 0.43 +0.4
155,880 + 10815 mRNA_2447 0.47 +1.1
155,884 - 10815 mRNA_2447 0.47 -0.2
155,886 + 10815 mRNA_2447 0.48 +0.7
155,887 - 10815 mRNA_2447 0.48 -0.3
155,892 + 10815 mRNA_2447 0.49 +1.0
155,904 + 10815 mRNA_2447 0.51 +0.7
155,904 + 10815 mRNA_2447 0.51 +0.7
155,922 - 10815 mRNA_2447 0.55 +0.2
155,944 + 10815 mRNA_2447 0.59 +0.2
155,947 - 10815 mRNA_2447 0.59 -0.8
155,952 + 10815 mRNA_2447 0.60 +1.8
155,964 + 10815 mRNA_2447 0.63 -0.2
155,983 + 10815 mRNA_2447 0.66 -0.3
155,988 - 10815 mRNA_2447 0.67 +2.8
155,991 - 10815 mRNA_2447 0.68 -0.9
155,998 + 10815 mRNA_2447 0.69 +0.2
156,004 + 10815 mRNA_2447 0.70 +2.7
156,010 - 10815 mRNA_2447 0.71 +1.2
156,011 - 10815 mRNA_2447 0.71 +0.2
156,012 + 10815 mRNA_2447 0.72 -0.3
156,019 + 10815 mRNA_2447 0.73 +1.8
156,030 + 10815 mRNA_2447 0.75 +0.9
156,037 - 10815 mRNA_2447 0.76 +0.1
156,041 - 10815 mRNA_2447 0.77 -0.4
156,044 + 10815 mRNA_2447 0.78 -0.5
156,047 + 10815 mRNA_2447 0.78 -0.5
156,049 + 10815 mRNA_2447 0.79 -0.6
156,065 + 10815 mRNA_2447 0.82 +2.6
156,069 + 10815 mRNA_2447 0.82 +0.3
156,079 - 10815 mRNA_2447 0.84 +2.1
156,079 - 10815 mRNA_2447 0.84 +3.0
156,079 - 10815 mRNA_2447 0.84 +1.0
156,086 - 10815 mRNA_2447 0.85 +1.3
156,106 + 10815 mRNA_2447 0.89 +0.4
156,110 + +0.0
156,129 - -0.1
156,141 + +0.0
156,150 + +0.2
156,170 - +1.0
156,171 - +0.3
156,182 + -0.8
156,290 - -0.5
156,291 - +0.2
156,297 + +0.4
156,331 + -0.2
156,335 + +0.3
156,337 + -0.1
156,338 + -0.2
156,350 - +0.8
156,353 + -0.1
156,397 - -0.6
156,401 + +0.9
156,402 + -0.3
156,407 + +0.8
156,415 + +0.6
156,417 + -0.1
156,431 + +0.2
156,435 + -0.4
156,450 + -0.2
156,467 + +0.1
156,493 - +0.2
156,503 - +0.2
156,507 + -0.4
156,523 - -0.4
156,525 + +0.4
156,529 - -1.1
156,534 - -0.3
156,535 + -0.9
156,543 + +0.0
156,545 - +0.4
156,549 + -0.9
156,560 - -1.8
156,568 + -0.5
156,571 - +0.4
156,593 - +0.0
156,597 - -0.6
156,599 - +1.8
156,600 - +0.3
156,609 - +1.1
156,612 + -0.6
156,614 + +2.7
156,620 + -0.2
156,622 + +0.0
156,623 + +1.3
156,631 + -0.0
156,705 - +2.2
156,715 - +0.6
156,720 - +0.3
156,723 - -0.3
156,732 + +1.1
156,733 + +1.3
156,742 - -0.4
156,746 - +2.3
156,756 - +1.2
156,801 + -1.1
156,883 + +0.3
156,919 + +0.3
156,938 + +0.4
157,027 + +1.1
157,047 + +0.6
157,053 - -0.6

Or see this region's nucleotide sequence