Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2462

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10829 and 10830 are separated by 810 nucleotides10830 and 10831 are separated by 222 nucleotides mRNA_2461: 10829 - Hypothetical Protein, at 195,673 to 198,074 10829 mRNA_2462: 10830 - SUPERFAMILY--SSF52047, at 198,885 to 199,828 10830 mRNA_2463: 10831 - Hypothetical Protein, at 200,051 to 202,030 10831

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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197,896 + -0.2
198,031 - +1.1
198,050 + +2.4
198,351 - +0.0
198,632 + -0.4
198,636 - +1.7
198,637 + +0.5
198,670 - -0.4
198,790 + +0.7
199,095 + 10830 mRNA_2462 0.22 +0.0
199,105 - 10830 mRNA_2462 0.23 -0.3
199,540 - 10830 mRNA_2462 0.69 +1.7
199,847 - +1.3
199,858 + +3.1
200,319 + 10831 mRNA_2463 0.14 +0.2
200,363 - 10831 mRNA_2463 0.16 +1.2
200,441 - 10831 mRNA_2463 0.20 +0.3
200,477 + 10831 mRNA_2463 0.22 +0.5
200,553 - 10831 mRNA_2463 0.25 -1.4

Or see this region's nucleotide sequence