Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2488

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10856 and 10857 are separated by 393 nucleotides mRNA_2488: 10856 - KOG1804 RNA helicase, at 267,770 to 269,827 10856 mRNA_2489: 10857 - HMMPfam-Surfeit locus protein 5 subunit 22 of Mediator complex-PF06179, at 270,221 to 270,948 10857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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266,850 - -0.9
267,068 - +0.5
267,476 - -0.1
267,563 + +1.2
267,860 - +1.5
267,971 - +1.9
268,107 + 10856 mRNA_2488 0.16 +0.4
268,244 - 10856 mRNA_2488 0.23 +0.7
268,515 - 10856 mRNA_2488 0.36 -0.3
268,562 + 10856 mRNA_2488 0.38 +1.4
268,568 - 10856 mRNA_2488 0.39 +1.2
268,869 - 10856 mRNA_2488 0.53 -0.5
268,969 - 10856 mRNA_2488 0.58 -0.7
268,997 - 10856 mRNA_2488 0.60 -1.1
269,100 + 10856 mRNA_2488 0.65 +0.5
269,225 - 10856 mRNA_2488 0.71 -0.6
269,389 + 10856 mRNA_2488 0.79 -1.0
269,405 - 10856 mRNA_2488 0.79 +0.2
269,485 + 10856 mRNA_2488 0.83 -1.2
269,537 - 10856 mRNA_2488 0.86 -0.1
269,823 + +0.4
269,829 - -1.3
269,833 + -0.0
269,888 + +0.0
270,107 - +0.9
270,182 + -1.0

Or see this region's nucleotide sequence