Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2499

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10867 and 10868 are separated by 569 nucleotides mRNA_2499: 10867 - BLAST secreted protein [Moniliophthora roreri MCA 2997], at 297,402 to 298,448 10867 mRNA_2500: 10868 - Hypothetical Protein, at 299,018 to 301,561 10868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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296,509 - -0.1
296,512 + +0.5
296,517 + +1.7
296,526 - +0.6
296,529 - -0.1
296,539 - +0.2
296,624 - -0.9
296,639 - +0.2
296,719 - +2.2
296,781 - -1.8
296,792 - +1.7
296,794 + -1.8
296,811 + -1.7
296,816 - -0.4
296,821 - +0.2
296,824 + +0.6
296,932 + +0.0
296,945 - +0.0
296,945 - +0.0
296,948 + -0.6
296,948 - +1.1
296,949 + +1.0
296,952 - -0.4
296,953 + +0.6
296,955 - +0.8
296,957 + -0.1
296,960 + +0.8
296,967 - +2.7
296,973 - -0.6
296,980 - -0.3
296,986 + +1.0
296,993 - +0.5
296,997 + -0.0
297,001 + -0.2
297,024 + +0.6
297,054 - +0.8
297,088 - +0.8
297,097 - +0.3
297,128 + -0.7
297,139 + +0.2
297,146 - -0.3
297,154 + +0.1
297,271 - +2.1
297,281 - +1.2
297,289 - +1.2
297,290 + -1.1
297,290 + -1.2
297,299 + +0.5
297,337 - +0.4
297,418 - +1.3
297,441 + +0.0
297,464 + +0.3
297,570 + 10867 mRNA_2499 0.16 -0.2
297,579 - 10867 mRNA_2499 0.17 +1.0
297,741 + 10867 mRNA_2499 0.32 +0.4
297,751 - 10867 mRNA_2499 0.33 +1.6
298,505 + +0.3
298,633 + -0.8
298,760 + -0.0
298,761 + -0.5
298,802 + +0.7
298,802 + -1.2
298,932 + -0.0
298,942 + +0.9
298,947 + -0.8
299,263 + -0.1

Or see this region's nucleotide sequence