Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2505

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10872 and 10873 are separated by 49 nucleotides10873 and 10874 overlap by 2 nucleotides mRNA_2504: 10872 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 309,895 to 311,581 10872 mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311,631 to 312,608 10873 mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312,607 to 314,311 10874

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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310,631 + 10872 mRNA_2504 0.44 +0.8
310,754 - 10872 mRNA_2504 0.51 +0.4
310,872 - 10872 mRNA_2504 0.58 -0.1
310,919 - 10872 mRNA_2504 0.61 -0.3
311,187 + 10872 mRNA_2504 0.77 +0.4
311,188 + 10872 mRNA_2504 0.77 -0.2
311,529 + +0.9
311,620 - +0.1
311,769 + 10873 mRNA_2505 0.14 +0.4
312,350 - 10873 mRNA_2505 0.74 +0.6
312,469 + 10873 mRNA_2505 0.86 +2.3
312,584 - +1.4
312,605 - +2.5
312,607 + +0.3
312,636 + +0.1
312,640 - +0.3
312,778 + 10874 mRNA_2506 0.10 -0.5
312,784 + 10874 mRNA_2506 0.10 +0.1
312,784 - 10874 mRNA_2506 0.10 +1.4
312,791 + 10874 mRNA_2506 0.11 +0.3
313,047 - 10874 mRNA_2506 0.26 +2.0
313,071 - 10874 mRNA_2506 0.27 +0.7
313,083 - 10874 mRNA_2506 0.28 -0.9
313,245 - 10874 mRNA_2506 0.37 -0.6
313,333 - 10874 mRNA_2506 0.43 -0.7
313,363 - 10874 mRNA_2506 0.44 -0.0
313,381 + 10874 mRNA_2506 0.45 -0.8
313,388 + 10874 mRNA_2506 0.46 -0.4
313,409 + 10874 mRNA_2506 0.47 +1.4
313,525 + 10874 mRNA_2506 0.54 -0.6
313,526 - 10874 mRNA_2506 0.54 +0.9

Or see this region's nucleotide sequence