Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2523

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10890 and 10891 are separated by 880 nucleotides10891 and 10892 are separated by 433 nucleotides mRNA_2522: 10890 - BLAST GPI ethanolamine phosphate transferase 2 [Talaromyces..., at 348,835 to 350,135 10890 mRNA_2523: 10891 - Hypothetical Protein, at 351,016 to 351,939 10891 mRNA_2524: 10892 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 352,373 to 353,826 10892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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350,418 + -0.8
350,591 + +1.8
350,629 - +0.7
350,686 + -0.3
350,951 - +2.9
351,395 - 10891 mRNA_2523 0.41 -0.8
351,419 + 10891 mRNA_2523 0.44 +1.9
351,543 + 10891 mRNA_2523 0.57 +0.9
351,549 + 10891 mRNA_2523 0.58 +1.1
351,690 + 10891 mRNA_2523 0.73 +0.9
351,829 - 10891 mRNA_2523 0.88 +0.4
351,839 + 10891 mRNA_2523 0.89 +0.1
351,971 - +0.8
352,141 - +0.4
352,262 + -0.5
352,300 - +0.2
352,528 + 10892 mRNA_2524 0.11 -0.9
352,694 - 10892 mRNA_2524 0.22 +1.4
352,702 + 10892 mRNA_2524 0.23 +1.3

Or see this region's nucleotide sequence