Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2524

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10891 and 10892 are separated by 433 nucleotides mRNA_2523: 10891 - Hypothetical Protein, at 351,016 to 351,939 10891 mRNA_2524: 10892 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 352,373 to 353,826 10892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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351,395 - 10891 mRNA_2523 0.41 -0.8
351,419 + 10891 mRNA_2523 0.44 +1.9
351,543 + 10891 mRNA_2523 0.57 +0.9
351,549 + 10891 mRNA_2523 0.58 +1.1
351,690 + 10891 mRNA_2523 0.73 +0.9
351,829 - 10891 mRNA_2523 0.88 +0.4
351,839 + 10891 mRNA_2523 0.89 +0.1
351,971 - +0.8
352,141 - +0.4
352,262 + -0.5
352,300 - +0.2
352,528 + 10892 mRNA_2524 0.11 -0.9
352,694 - 10892 mRNA_2524 0.22 +1.4
352,702 + 10892 mRNA_2524 0.23 +1.3
352,983 + 10892 mRNA_2524 0.42 +1.9
353,158 - 10892 mRNA_2524 0.54 +0.6
353,159 - 10892 mRNA_2524 0.54 +1.6
353,453 + 10892 mRNA_2524 0.74 +0.3
353,473 + 10892 mRNA_2524 0.76 +0.6
353,732 - +0.9
353,869 - +0.7
354,353 - -0.1
354,577 - -0.0
354,754 + +1.4
354,763 + +0.2
354,780 + +1.6

Or see this region's nucleotide sequence