Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2546

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10913 and 10914 are separated by 550 nucleotides10914 and 10915 are separated by 249 nucleotides mRNA_2545: 10913 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 407,193 to 413,083 10913 mRNA_2546: 10914 - Hypothetical Protein, at 413,634 to 416,302 10914 mRNA_2547: 10915 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 416,552 to 418,992 10915

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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414,288 - 10914 mRNA_2546 0.25 +0.6
414,465 - 10914 mRNA_2546 0.31 +0.0
414,477 - 10914 mRNA_2546 0.32 +0.4
414,480 - 10914 mRNA_2546 0.32 +3.2
414,486 - 10914 mRNA_2546 0.32 -1.3
414,725 - 10914 mRNA_2546 0.41 +0.5
414,733 - 10914 mRNA_2546 0.41 +1.2
414,743 + 10914 mRNA_2546 0.42 -0.1
414,744 - 10914 mRNA_2546 0.42 -0.0
415,210 - 10914 mRNA_2546 0.59 +2.0
415,220 + 10914 mRNA_2546 0.59 +1.2
415,353 - 10914 mRNA_2546 0.64 +1.9
415,461 - 10914 mRNA_2546 0.68 +1.3
415,461 - 10914 mRNA_2546 0.68 +1.3
415,466 + 10914 mRNA_2546 0.69 +0.3
415,479 + 10914 mRNA_2546 0.69 -0.9
415,856 - 10914 mRNA_2546 0.83 +3.4
415,950 - 10914 mRNA_2546 0.87 -0.0
416,094 - +0.1
416,190 + +1.4

Or see this region's nucleotide sequence