Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2567

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10934 and 10935 are separated by 103 nucleotides10935 and 10936 are separated by 500 nucleotides mRNA_2566: 10934 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 458,931 to 461,054 10934 mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461,158 to 463,055 10935 mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463,556 to 465,484 10936

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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460,248 - 10934 mRNA_2566 0.62 +0.3
460,359 - 10934 mRNA_2566 0.67 +1.3
460,583 - 10934 mRNA_2566 0.78 +1.0
460,662 - 10934 mRNA_2566 0.81 +0.3
460,919 + -1.0
461,067 + +0.4
461,092 - -1.4
461,368 + 10935 mRNA_2567 0.11 +0.9
461,384 - 10935 mRNA_2567 0.12 +0.4
461,393 - 10935 mRNA_2567 0.12 -0.2
461,721 + 10935 mRNA_2567 0.30 -0.7
461,748 - 10935 mRNA_2567 0.31 -1.8
461,814 + 10935 mRNA_2567 0.35 +0.3
461,993 + 10935 mRNA_2567 0.44 -0.5
462,012 + 10935 mRNA_2567 0.45 +0.3
462,027 + 10935 mRNA_2567 0.46 -0.1
462,438 - 10935 mRNA_2567 0.67 +1.8
462,439 - 10935 mRNA_2567 0.67 +1.0
462,694 - 10935 mRNA_2567 0.81 +0.7
462,886 + +1.5
463,011 + +1.7
463,143 - +0.1
463,260 + +1.5
463,456 + +0.8
463,474 + +0.4
463,523 - +0.3
463,527 - +2.9
463,535 - +1.0
463,537 - -0.4
463,579 + -0.8
463,649 - +0.5
463,686 + -0.5
463,687 - -0.4
463,747 + +0.7
463,835 + 10936 mRNA_2568 0.14 -2.1
463,842 + 10936 mRNA_2568 0.15 +0.2
463,925 - 10936 mRNA_2568 0.19 +0.6
463,956 + 10936 mRNA_2568 0.21 -0.5
464,037 - 10936 mRNA_2568 0.25 +1.2

Or see this region's nucleotide sequence