Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2583

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10949 and 10950 are separated by 48 nucleotides10950 and 10951 are separated by 102 nucleotides10951 and 10952 are separated by 239 nucleotides mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492,942 to 494,422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494,471 to 495,097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495,200 to 499,404 10951 mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499,644 to 502,553 10952

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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494,201 + 10949 mRNA_2581 0.85 +2.0
494,232 + 10949 mRNA_2581 0.87 -0.6
494,321 - +0.4
494,326 - +0.7
494,479 - +1.1
494,633 + 10950 mRNA_2582 0.26 +0.5
494,638 - 10950 mRNA_2582 0.27 +1.8
494,651 - 10950 mRNA_2582 0.29 +0.7
494,654 + 10950 mRNA_2582 0.29 -0.4
494,675 - 10950 mRNA_2582 0.33 +1.3
494,680 + 10950 mRNA_2582 0.33 +0.5
494,765 - 10950 mRNA_2582 0.47 +0.4
494,769 - 10950 mRNA_2582 0.48 +0.6
494,887 - 10950 mRNA_2582 0.66 +2.8
494,926 + 10950 mRNA_2582 0.73 +1.4
494,937 + 10950 mRNA_2582 0.74 +0.7
494,952 - 10950 mRNA_2582 0.77 +0.5
495,085 + +1.9
495,119 - -1.8
495,263 + +1.6
495,401 + -0.8
495,972 - 10951 mRNA_2583 0.18 -1.7
496,188 + 10951 mRNA_2583 0.23 -0.3
496,345 - 10951 mRNA_2583 0.27 +1.3
496,363 - 10951 mRNA_2583 0.28 +1.4
496,372 - 10951 mRNA_2583 0.28 -0.4
496,401 + 10951 mRNA_2583 0.29 -0.2
496,778 + 10951 mRNA_2583 0.38 +0.2
496,901 + 10951 mRNA_2583 0.40 -0.0
496,925 + 10951 mRNA_2583 0.41 +2.2
496,951 + 10951 mRNA_2583 0.42 -0.5
497,102 + 10951 mRNA_2583 0.45 -0.4
497,136 + 10951 mRNA_2583 0.46 -0.0
497,613 - 10951 mRNA_2583 0.57 -0.4
497,676 - 10951 mRNA_2583 0.59 +1.0
497,843 - 10951 mRNA_2583 0.63 +0.1
497,878 + 10951 mRNA_2583 0.64 -1.7
497,994 - 10951 mRNA_2583 0.66 +0.2
498,017 + 10951 mRNA_2583 0.67 +1.8
498,536 - 10951 mRNA_2583 0.79 -0.0
498,861 - 10951 mRNA_2583 0.87 +0.6
498,918 + 10951 mRNA_2583 0.88 -2.0
499,013 + -1.0
499,320 + -0.7
499,323 - +1.0
499,471 + -0.1
499,479 - +1.2
499,635 - -1.2
499,639 + -0.9
499,751 - +0.2
499,757 - +0.0
499,760 - -0.4
499,773 - -0.7
499,778 + -0.7
499,778 + -0.1
499,885 - -0.1
499,942 - 10952 mRNA_2584 0.10 +0.4
500,074 + 10952 mRNA_2584 0.15 -0.2
500,203 - 10952 mRNA_2584 0.19 -0.4
500,212 - 10952 mRNA_2584 0.20 -0.2
500,227 + 10952 mRNA_2584 0.20 +0.5
500,252 + 10952 mRNA_2584 0.21 +0.0
500,322 + 10952 mRNA_2584 0.23 +1.4
500,329 - 10952 mRNA_2584 0.24 +0.1
500,384 + 10952 mRNA_2584 0.25 -0.3
500,397 - 10952 mRNA_2584 0.26 -1.2
500,402 - 10952 mRNA_2584 0.26 +0.6

Or see this region's nucleotide sequence